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pinellolab / PerTurbo Public

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Improve model initialization and priors#46

Merged

logan-blaine merged 11 commits into

mainpinellolab/PerTurbo:mainfrom

fix_gene_meanpinellolab/PerTurbo:fix_gene_meanCopy head branch name to clipboard

May 19, 2025

Conversation Commits11 (11)Checks Files changed

Merged

Improve model initialization and priors#46
logan-blaine merged 11 commits into
mainfrom
fix_gene_mean

Commits

Commits on May 7, 2025

reset gene_mean prior to observed mean
logan-blaine
committed
add log-dispersion back to logits
logan-blaine
committed
tighten priors on covariate effects
logan-blaine
committed
method of moments initialization with optional smoothing
logan-blaine
committed
add interpolative smoothing between MoM and curve fit
logan-blaine
committed
use smoothed estimate if value missing
logan-blaine
committed

Commits on May 12, 2025

fix gene mean initialization bug
logan-blaine
committed
make efficiency a per-guide/gene property
logan-blaine
committed

Commits on May 19, 2025

re-enable cell factors (experimental)
logan-blaine
committed
Merge branch 'main' into fix_gene_mean
logan-blaine
authored
set init default dtypes just in case
logan-blaine
committed

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