Implementations of various simulations for integrate and fire models, as well as conductance based models with synaptic neurotransmission

Biophysically detailed model of somatosensory thalamocortical circuit (Borges et al accepted)

Model of the hippocampus over the sleep-wake cycle using Hodgkin-Huxley neurons (Aussel et al 2018)

Ion concentration dynamics as a mechanism for neuronal bursting (Barreto & Cressman 2011)

Numerical Integration of Izhikevich and HH model neurons (Stewart and Bair 2009)

Stochastic versions of the Hodgkin-Huxley equations (Goldwyn, Shea-Brown 2011) (pylab)

LIP and FEF rhythmic attention model (Aussel et al. 2023)

Sodium potassium ATPase pump (Chapman et al. 1983)

Simulated cortical color opponent receptive fields self-organize via STDP (Eguchi et al., 2014)

NMDAR & GABAB/KIR Give Bistable Dendrites: Working Memory & Sequence Readout (Sanders et al., 2013)

Python scripts supporting a tutorial on the Hodgkin-Huxley model.

A phantom bursting mechanism for episodic bursting (Bertram et al 2008)

A multiphysics neuron model for cellular volume dynamics (Lee et al. 2011)

Interactive Python simulator for a modified Morris-Lecar model (Na/K-based), with phase-plane and time-series visualisation.

Continuous dynamical neuron model — 5 ODEs, 17 parameters, no discontinuous reset

Squid axon: Bifurcation analysis of mode-locking (Lee & Kim 2006) (Gangal & Dar 2014)

A Moth MGC Model-A HH network with quantitative rate reduction (Buckley & Nowotny 2011)

Hodgkin-Huxley ODE/PDE model simulation scripts and notebooks for the reaction - diffusion model

Gamma genesis in the basolateral amygdala (Feng et al 2019)

Neural mass model based on single cell dynamics to model pathophysiology (Zandt et al 2014)