fix/feat: CHIP normalization, setup timeout, cleanup command, genome race fix#78

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lucapinello wants to merge 4 commits intomainfrom

fix/post-v040-followups

Commits on May 6, 2026

fix: CHIP strand suffix mismatch in normalization + alphagenome_pt CDF alias

lp698
and
claude
committed
feat: add --setup-timeout to chorus setup

lp698
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claude
committed
feat: add chorus cleanup command

lp698
and
claude
committed
fix: genome concurrent decompression race + stale ChromBPNet health probe

lp698
and
claude
committed