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Sparsify guide efficiency #48

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Merged
logan-blaine merged 12 commits into from
May 27, 2025
Merged

Sparsify guide efficiency #48

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6be7b16
update documentation for module and module files
logan-blaine May 26, 2025
11a3e6a
disabled categorical covariates
logan-blaine May 26, 2025
1bbdae3
add warning for potentially problematic continuous covariates
logan-blaine May 26, 2025
7ed9d07
add test for continous covariates
logan-blaine May 26, 2025
e16bc1f
output factor effects when no cis effects are present
logan-blaine May 26, 2025
e27ae6f
allow sparse guide x gene efficiency
logan-blaine May 26, 2025
041046d
allow sparse guide by element
logan-blaine May 26, 2025
80edfeb
test loading sparse tensors onto gpu
logan-blaine May 26, 2025
2e87be0
turn on sparse tensor loading by default for gpu
logan-blaine May 26, 2025
866a440
use sparse element by gene matrix
logan-blaine May 26, 2025
ac188be
disable efficiency if using n_pert_factors
logan-blaine May 27, 2025
3368603
disable efficiency if using n_pert_factors (for now)
logan-blaine May 27, 2025
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2 changes: 1 addition & 1 deletion Perturbo_reproducibility
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Submodule Perturbo_reproducibility updated from 7a20b9 to 34328f
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