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Replaced the MD5 hashes for 'dhs+encode+gencode.hg38.bed.tar.gz' and 'gencode.protein_coding.bed.tar.gz' in the MD5ANNOTATION dictionary to reflect updated file versions.
Bump CRISPRme version to 2.1.9 in crisprme.py. Set low_memory=False in adjust_cols.py for more reliable CSV reading. Suppress error output when moving target files in submit_job_automated_new_multiple_vcfs.sh.
Consolidated and moved error handling for off-targets search steps to a single location after process completion. This reduces code duplication and ensures consistent error checking and cleanup for reference, variant, and indel searches.
ManuelTgn
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