Release Amplicon Upolu · pinellolab/CRISPResso2

Major Changes

Add feature for plotting of amino acids when run with --coding_seq by @mbowcut2 (#552)
Added upset plot plotting of base editor edit combinations when run with --base_editor_output by @mbowcut2 (#586)
Added VCF output (see --vcf_output) by @trevormartinj7 and @Colelyman (#613)
Guardrail dropdown by @Snicker7 (#619)
Pixi implementation by @Colelyman (#618)
CSS refresh by @Snicker7 (#634)

Pooled info parsing fix by @kclem in #558
Force cloned include_idxs to be np.arrays (otherwise breaks downstrea… by @kclem in #559
BE Plot Name Fix by @mbowcut2 in #564
Fix broken cup link by @Colelyman in #571
Fix deletion at second and last positions by @Colelyman in #574
Update Docker and remove defaults channel (#135) by @Colelyman in #575
Improved Exception handling and fixed not_aln edge case bug by @Colelyman in #578
Fix Circle CI install and fix Docker entrypoint by @Colelyman in #579
Fix --base_editor_output parameter for Circle CI by @Colelyman in #581
Update tests Makefile and batch expected output by @Colelyman in #582
Fix QWC inference across amplicons by @Colelyman in #598
Fix fastp options by @kclem in #591
Fix SyntaxWarning in plot function by @Colelyman in #600
Fix a bug for --bam_output when there are unaligned reads by @Colelyman in #602
Fix enrichment in compare plots and compare plot diffs by @Colelyman in #626
Fix issue 612, coding_seq filename too long (#152) by @mbowcut2 in #627
Bug Fix: cut_point not in exon_positions by @mbowcut2 in #628
Add tool name for report generation in CRISPRessoPooledWGSCompare by @Colelyman in #630
Coords_r fix for extension sequences that end at the end of the reference sequence. by @kclem in #615
Fix last chunk missing in CRISPRessoPooled by @Colelyman in #635

Full Changelog: v2.3.3...v2.3.4
See also https://docs.crispresso.com/changelog.html