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add anvi-gen-contigs-database module#11713

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telatin wants to merge 2 commits into
nf-core:masterfrom
quadram-institute-bioscience:anvi-gen-ctg
Open

add anvi-gen-contigs-database module#11713
telatin wants to merge 2 commits into
nf-core:masterfrom
quadram-institute-bioscience:anvi-gen-ctg

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@telatin telatin commented May 20, 2026

  • Adding a new module for Anvi'o v9 anvi-gen-contigs-database

PR checklist

Closes #11712

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

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new module: anvio/anvi-gen-contigs-database

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