QC

For installation, first clone the repository.

You can install all the dependencies directly using conda:

conda env create -f environment.yml

## Python 2
pip install -r requirements.txt 
## or Python 3
pip3 install -r requirements.txt

Name		Name	Last commit message	Last commit date
Latest commit History 78 Commits
adapter_sequences		adapter_sequences
README.md		README.md
barcodeplot.py		barcodeplot.py
basequality.py		basequality.py
environment.yml		environment.yml
fastQC_table.py		fastQC_table.py
fastQC_table_quality.py		fastQC_table_quality.py
fastq_plots.R		fastq_plots.R
fastq_unifier.py		fastq_unifier.py
flagstat.sh		flagstat.sh
flagstat_condition.sh		flagstat_condition.sh
main-parallel.sh		main-parallel.sh
main.sh		main.sh
mapstats.py		mapstats.py
mapstats_condition.py		mapstats_condition.py
plotmapped_chr.py		plotmapped_chr.py
primer_QC.py		primer_QC.py
primersplot.py		primersplot.py
report.py		report.py
requirements.txt		requirements.txt
resumeplot.py		resumeplot.py

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