Hi, thanks for creating this excellent tool.
I try to build a complete motif database. I used file provided first. I used the file provided in README to run this part.
MotifRaptor snpindex -vcf 1000G.EUR.QC.plink.simple.vcf -gi genome_index -p 4 seems to finish without error and generate .lcp , _POS_REF_ALT.txt , .sa , _SEQ_REF_ALT.txt file for each chromsome. However, I found that _SEQ_REF_ALT.txt files are 17M to 98M large with 0 line. And MotifRaptor snpscan -gi genome_index -pfm ./motifdatabase/pfmfiles -mo ./motifdatabase/motifscanfiles -p 4 will quickly output done without any file generate.
I wonder what's wrong and what should I do next.
Thank you very much for your help.
Hi, thanks for creating this excellent tool.
I try to build a complete motif database. I used file provided first. I used the file provided in README to run this part.
MotifRaptor snpindex -vcf 1000G.EUR.QC.plink.simple.vcf -gi genome_index -p 4seems to finish without error and generate.lcp,_POS_REF_ALT.txt,.sa,_SEQ_REF_ALT.txtfile for each chromsome. However, I found that_SEQ_REF_ALT.txtfiles are 17M to 98M large with 0 line. AndMotifRaptor snpscan -gi genome_index -pfm ./motifdatabase/pfmfiles -mo ./motifdatabase/motifscanfiles -p 4will quickly output done without any file generate.I wonder what's wrong and what should I do next.
Thank you very much for your help.