Fix typo of CRISPResssoPlot when plotting nucleotide quilt (#250)

Colelyman · web-flow · commit 39ce008bdddc · 2022-10-08T23:09:58.000-04:00
diff --git a/CRISPResso2/CRISPRessoCORE.py b/CRISPResso2/CRISPRessoCORE.py
@@ -4541,7 +4541,7 @@ def get_scaffold_len(row, scaffold_start_loc, scaffold_seq):
                         'sgRNA_mismatches': sgRNA_mismatches,
                         'quantification_window_idxs': new_include_idx,
                     }
-                    plot(CRISPResssoPlot.plot_nucleotide_quilt, plot_11b_input)
+                    plot(CRISPRessoPlot.plot_nucleotide_quilt, plot_11b_input)
                     crispresso2_info['results']['refs'][ref_names_for_pe[0]]['plot_11b_roots'].append(os.path.basename(plot_root))
                     crispresso2_info['results']['refs'][ref_names_for_pe[0]]['plot_11b_captions'].append('Figure 11b: Nucleotide distribution around the ' + sgRNA_legend + '.')
                     crispresso2_info['results']['refs'][ref_names_for_pe[0]]['plot_11b_datas'].append([('Nucleotide frequency in quantification window for ' + ref_name, os.path.basename(crispresso2_info['results']['refs'][ref_name]['quant_window_nuc_freq_filename'])) for ref_name in ref_names_for_pe])

Original file line number	Diff line number	Diff line change
`@@ -4541,7 +4541,7 @@ def get_scaffold_len(row, scaffold_start_loc, scaffold_seq):`
`4541`	`4541`	`'sgRNA_mismatches': sgRNA_mismatches,`
`4542`	`4542`	`'quantification_window_idxs': new_include_idx,`
`4543`	`4543`	`}`
`4544`		`- plot(CRISPResssoPlot.plot_nucleotide_quilt, plot_11b_input)`
	`4544`	`+ plot(CRISPRessoPlot.plot_nucleotide_quilt, plot_11b_input)`
`4545`	`4545`	`crispresso2_info['results']['refs'][ref_names_for_pe[0]]['plot_11b_roots'].append(os.path.basename(plot_root))`
`4546`	`4546`	`crispresso2_info['results']['refs'][ref_names_for_pe[0]]['plot_11b_captions'].append('Figure 11b: Nucleotide distribution around the ' + sgRNA_legend + '.')`
`4547`	`4547`	`crispresso2_info['results']['refs'][ref_names_for_pe[0]]['plot_11b_datas'].append([('Nucleotide frequency in quantification window for ' + ref_name, os.path.basename(crispresso2_info['results']['refs'][ref_name]['quant_window_nuc_freq_filename'])) for ref_name in ref_names_for_pe])`