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    34 repositories

    • transmartApp

      Public
      tranSMART is a knowledge management platform that enables scientists to develop and refine research hypotheses by investigating correlations between genetic and…
      JavaScript
      •
      GNU General Public License v3.0
      •74•6•0•14•Updated Apr 9, 2024Apr 9, 2024

    • transmart

      Public
      tranSMART is a knowledge management platform that enables scientists to develop and refine research hypotheses by investigating correlations between genetic and…
      JavaScript
      •3•7•7•2•Updated Mar 12, 2024Mar 12, 2024

    • transmart-docker

      Public
      Docker for tranSMART
      Groovy
      •
      GNU General Public License v3.0
      •2•3•0•0•Updated Jun 28, 2022Jun 28, 2022

    • transmartApp-doc

      Public
      Python
      •3•1•0•0•Updated Mar 24, 2020Mar 24, 2020

    • transmart-data

      Public
      Tools for managing tranSMART's database
      PLSQL
      •
      GNU General Public License v3.0
      •46•2•0•3•Updated May 31, 2019May 31, 2019

    • Rmodules

      Public
      A R statistical analysis module plugin for tranSMART
      Groovy
      •
      Other
      •34•0•0•5•Updated May 29, 2019May 29, 2019

    • Scripts

      Public
      A collection of scripts for managing all the tranSMART Foundation repositories
      Shell
      •
      GNU General Public License v3.0
      •5•0•3•2•Updated Apr 12, 2019Apr 12, 2019

    • tranSMART-ETL

      Public
      tranSMART ETL pipelines and configurations
      Groovy
      •26•0•0•0•Updated Sep 21, 2018Sep 21, 2018

    • transmart-xnat-viewer

      Public
      Connector to link tranSMART to an XNAT server
      Groovy
      •6•0•0•0•Updated Jul 30, 2018Jul 30, 2018

    • transmart-gwas-plink

      Public
      Plink integration for tranSMART
      Groovy
      •
      GNU General Public License v3.0
      •4•0•0•1•Updated Jul 20, 2018Jul 20, 2018

    • transmart-test

      Public
      Functional tests for tranSMART
      Groovy
      •4•0•0•0•Updated May 3, 2018May 3, 2018

    • transmart-ICE

      Public
      ICE tool for transmart ETL (formerly FCL4tranSMART)
      Java
      •1•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • RInterface

      Public
      A R module with packaged functions to query the tranSMART database directly
      R
      •
      Other
      •9•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • transmart-batch

      Public
      tranSMART pipeline alternative to ETL, using Spring Batch
      Groovy
      •14•2•0•0•Updated Mar 13, 2018Mar 13, 2018

    • GWAVA

      Public
      Genome Wide Association Study Visualizer (from Pfizer)
      HTML
      •2•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • transmart-rest-api

      Public
      HTTP available tranSMART RESTful API
      Groovy
      •
      Other
      •11•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • transmart-gwas-plugin

      Public
      The transmart (and grails) plugin that contains the GWAS elements.
      PLSQL
      •14•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • transmart-xnat-importer-plugin

      Public
      Groovy
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • SmartR

      Public
      SmartR
      JavaScript
      •
      Apache License 2.0
      •13•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • IpaApi

      Public
      Java
      •
      Apache License 2.0
      •2•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • dalliance-plugin

      Public
      JavaScript
      •4•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • transmart-mydas

      Public
      Java
      •5•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • mydas

      Public
      mydas is an easy-to-extend Java DAS server framework.
      Java
      •2•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • blend4j-plugin

      Public
      blend4j-plugin is a grails plugin to access galaxy.
      Groovy
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • transmart-metacore-plugin

      Public
      The tranSMART plugin Metacore
      Groovy
      •6•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • folder-management-plugin

      Public
      The transmart (and grails) plugin that contains the folder-management elements.
      Groovy
      •17•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • transmart-core-db

      Public
      TranSMART Core
      Groovy
      •
      GNU General Public License v3.0
      •30•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • transmart-extensions

      Public
      Elements that are being collected for refactoring but do not yet have a home. This project needs to be reviewed often!
      Java
      •10•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • transmart-legacy-db

      Public
      Contains the Grails domain declarations of the legacy transmart schema
      Groovy
      •
      GNU General Public License v2.0
      •6•0•0•0•Updated Mar 13, 2018Mar 13, 2018

    • transmart-core-api

      Public
      Groovy
      •
      GNU General Public License v3.0
      •15•0•0•0•Updated Mar 13, 2018Mar 13, 2018
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