Repositories list

• workshop

  Public archive
  TeX

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 18, 2026Feb 18, 2026

• handbook

  Public
  HTML

  •

  MIT License

  •66 forks•00 stars•77 issues•1515 pull requests•Updated Apr 25, 2024Apr 25, 2024

• bpmn

  Public
  Ruby

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 17, 2022Nov 17, 2022

• ProjectWebForm

  Public archive
  Web interface for procedures to populate the IBISBA-HUB

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •00 forks•00 stars•22 issues•66 pull requests•Updated May 6, 2021May 6, 2021

• bioschemas.github.io

  Public
  Files for the Bioschemas website.

  HTML

  •7373 forks•00 stars•00 issues•00 pull requests•Updated May 11, 2020May 11, 2020

• ibisba.github.io

  Public
  IBISBAHub webpages

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 5, 2020May 5, 2020

• tascu_data

  Public
  Java

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Feb 24, 2020Feb 24, 2020

• RetroPath2-cwl

  Public
  RetroPath2.0 IBISBA Node

  Common Workflow Language

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 21, 2019Aug 21, 2019

• knime-workflow-base

  Public archive
  Base image for IBISBA Nodes

  Shell

  •44 forks•44 stars•00 issues•00 pull requests•Updated Aug 20, 2019Aug 20, 2019

• knime-base

  Public archive
  KNIME base image for IBISBA Nodes

  Dockerfile

  •

  Other

  •22 forks•22 stars•00 issues•00 pull requests•Updated Aug 20, 2019Aug 20, 2019

• DBT_pipeline

  Public
  All tools associated with the Design Build Test pipeline for pathway discovery through RetroPath

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 8, 2019Aug 8, 2019

• extractRetroRules

  Public
  Python script that extracts all the rules from the SQL dump from the retrorules.org website

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 5, 2019Jun 5, 2019

• galaxy_workflow

  Public
  Collection of workflow files for the Galaxy interface

  00 forks•00 stars•00 issues•00 pull requests•Updated Jun 5, 2019Jun 5, 2019

• rpRanker

  Public
  Python package for post-rp2paths steps including: resconstruction of full pathways, calculation of Gibbs free energy, flux balance analysis and SBML handling in…

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 5, 2019Jun 5, 2019

• galaxy_selenzyme

  Public
  Galaxy node that queries the http://selenzyme.synbiochem.co.uk/ REST webservice

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 5, 2019Jun 5, 2019

• galaxy_rpRanker

  Public
  Collection of tools that: complete reactions, perform FBA analysis and thermodynamics calculation of the output of RetroPath2.0

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 5, 2019Jun 5, 2019

• galaxy_retropath2.0

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 5, 2019Jun 5, 2019

• test-cwl

  Public
  Common Workflow Language

  •00 forks•00 stars•22 issues•00 pull requests•Updated Apr 4, 2019Apr 4, 2019

• rp2paths-cwl

  Public
  CWL/Docker wrapping of RP2Paths

  Common Workflow Language

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 26, 2019Mar 26, 2019

• bioconda-recipes

  Public
  Conda recipes for the bioconda channel.

  Shell

  •3.9k3.9k forks•00 stars•00 issues•00 pull requests•Updated Sep 12, 2018Sep 12, 2018

• training

  Public archive
  Apache License 2.0

  •00 forks•00 stars•55 issues•00 pull requests•Updated Jun 7, 2018Jun 7, 2018