airqtl/pyproject.toml at master · grnlab/airqtl · GitHub

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[project]
name = "airqtl"
version = "1.0.0"
authors = [
	{ name="Lingfei Wang", email="Lingfei.Wang.github@outlook.com" },
	{ name="Matthew Funk"},
	{ name="Yuhe Wang"},
]
description = "Array of Interleaved Repeats for Quantitative Trait Loci"
readme = "README.rst"
license = "BSD-3-Clause"
keywords = ["qtl","eqtl","scqtl","sceqtl","lmm","quantitative trait loci","expression quantitative trait loci","single-cell quantitative trait loci","single-cell expression quantitative trait loci","linear mixed model","linear mixed models","population-scale scRNA-seq","gene regulatory network","network inference","causal inference","mendelian randomization"]
requires-python = ">=3.12"
classifiers = [
	"Development Status :: 5 - Production/Stable",
	"Environment :: Console",
	"Environment :: GPU :: NVIDIA CUDA",
	"Framework :: Pytest",
	"Intended Audience :: Science/Research",
	"Intended Audience :: Developers",
	"Intended Audience :: Education",
	"Operating System :: OS Independent",
	"Programming Language :: Python :: 3",
	"Topic :: Scientific/Engineering :: Bio-Informatics"
]
dependencies = [
	"numpy",
	"h5py",
	"scipy",
	"pandas",
	"networkx",
	"torch>=2.0",
	'scikit-learn',
	"lz4",
	"normalisr",
	"docstring2argparse",
	"snakemake"
]

[project.urls]
Homepage = "https://github.com/grnlab/airqtl"
Issues = "https://github.com/grnlab/airqtl/issues"
Repository = "https://github.com/grnlab/airqtl.git"

[project.scripts]
airqtl = "airqtl:main"

[build-system]
requires = ["setuptools>=61.0"]
build-backend = "setuptools.build_meta"