Run npm update to (correctly) regenerate package-lock.json and update versions

There's not an easy way to regenerate the lockfile while preserving the exact versions because the NPM issue appears to be with version resolution. This particular set of versions randomly caused the issue ¯\_(ツ)_/¯

This is caused by npm/cli#6301 and was caught by NixOS/nixpkgs#479805

Author: magneticflux-